rvHPDT: Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees

To detecting rare variants for binary traits using general pedigrees, the pedigree disequilibrium tests are proposed by collapsing rare haplotypes/variants with/without weights. To run the test, MERLIN is needed in Linux for haplotyping.

Version: 4.0
Depends: gtools, R (≥ 2.15.0)
Imports: stats, utils
Published: 2022-05-12
Author: Wei Guo
Maintainer: Wei Guo <wei.guo3 at nih.gov>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: rvHPDT results

Documentation:

Reference manual: rvHPDT.pdf

Downloads:

Package source: rvHPDT_4.0.tar.gz
Windows binaries: r-devel: rvHPDT_4.0.zip, r-release: rvHPDT_4.0.zip, r-oldrel: rvHPDT_4.0.zip
macOS binaries: r-release (arm64): rvHPDT_4.0.tgz, r-oldrel (arm64): rvHPDT_4.0.tgz, r-release (x86_64): rvHPDT_4.0.tgz
Old sources: rvHPDT archive

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