“TreeSearch” is an R package that allows parsimony search on morphological datasets.
The “TreeSearch” package can be installed as any other package. To get the latest stable version from CRAN, type
into the R (or RStudio) command line.
Once installed, load the “TreeSearch” package into R using
Activate the graphical user interface by typing
In Jan 2022, some users are reporting issues after loading trees from Nexus files. These arise due to an issue in the underlying “ape” package. To install a patched version, close and re-launch R and run:
if (!require('remotes')) install.packages('remotes') ::install_github("ms609/ape@patch-3")remotes
Windows users may need to install Rtools before installing from the GitHub source.
To get the latest development version from GitHub, type