CRAN Package Check Results for Package immunarch

Last updated on 2022-09-25 15:56:44 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.7.0 66.89 295.47 362.36 OK
r-devel-linux-x86_64-debian-gcc 0.7.0 56.78 327.66 384.44 OK
r-devel-linux-x86_64-fedora-clang 0.7.0 630.44 NOTE
r-devel-linux-x86_64-fedora-gcc 0.7.0 583.60 OK
r-devel-windows-x86_64 0.7.0 124.00 471.00 595.00 NOTE
r-patched-linux-x86_64 0.7.0 74.91 320.62 395.53 OK
r-release-linux-x86_64 0.7.0 52.33 402.89 455.22 OK
r-release-macos-arm64 0.7.0 165.00 NOTE
r-release-macos-x86_64 0.7.0 213.00 NOTE
r-release-windows-x86_64 0.7.0 82.00 480.00 562.00 NOTE
r-oldrel-macos-arm64 0.7.0 162.00 NOTE
r-oldrel-macos-x86_64 0.7.0 208.00 NOTE
r-oldrel-windows-ix86+x86_64 0.7.0 133.00 487.00 620.00 ERROR

Check Details

Version: 0.7.0
Check: package dependencies
Result: NOTE
    Imports includes 38 non-default packages.
    Importing from so many packages makes the package vulnerable to any of
    them becoming unavailable. Move as many as possible to Suggests and
    use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.7.0
Check: installed package size
Result: NOTE
     installed size is 6.6Mb
     sub-directories of 1Mb or more:
     data 3.3Mb
     doc 1.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.7.0
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'immunarch-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: repLoad
    > ### Title: Load immune repertoire files into the R workspace
    > ### Aliases: repLoad
    >
    > ### ** Examples
    >
    > # To load the data from a single file (note that you don't need to specify the data format):
    > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/Sample1.tsv.gz")
    > immdata <- repLoad(file_path)
    
    == Step 1/3: loading repertoire files... ==
    
    Processing "<initial>" ...
     -- [1/1] Parsing "D:/temp/RtmpULq4sE/RLIBS_b38460a31c6c/immunarch/extdata/io/Sample1.tsv.gz" -- immunarch
    
    == Step 2/3: checking metadata files and merging files... ==
    
    Processing "<initial>" ...
     -- Metadata file not found; creating a dummy metadata...
    
    == Step 3/3: processing paired chain data... ==
    
    Done!
    
    >
    > # Suppose you have a following structure in your folder:
    > # >_ ls
    > # immunoseq1.txt
    > # immunoseq2.txt
    > # immunoseq3.txt
    > # metadata.txt
    >
    > # To load the whole folder with every file in it type:
    > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/")
    > immdata <- repLoad(file_path)
    
    == Step 1/3: loading repertoire files... ==
    
    Error in .split_to_batches(.path, "<initial>") :
     Input file or directory not found: D:/temp/RtmpULq4sE/RLIBS_b38460a31c6c/immunarch/extdata/io/
    Calls: repLoad -> .split_to_batches
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.7.0
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'immunarch-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: repLoad
    > ### Title: Load immune repertoire files into the R workspace
    > ### Aliases: repLoad
    >
    > ### ** Examples
    >
    > # To load the data from a single file (note that you don't need to specify the data format):
    > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/Sample1.tsv.gz")
    > immdata <- repLoad(file_path)
    
    == Step 1/3: loading repertoire files... ==
    
    Processing "<initial>" ...
     -- [1/1] Parsing "D:/temp/RtmpULq4sE/RLIBS_b38460a31c6c/immunarch/extdata/io/Sample1.tsv.gz" -- immunarch
    
    == Step 2/3: checking metadata files and merging files... ==
    
    Processing "<initial>" ...
     -- Metadata file not found; creating a dummy metadata...
    
    == Step 3/3: processing paired chain data... ==
    
    Done!
    
    >
    > # Suppose you have a following structure in your folder:
    > # >_ ls
    > # immunoseq1.txt
    > # immunoseq2.txt
    > # immunoseq3.txt
    > # metadata.txt
    >
    > # To load the whole folder with every file in it type:
    > file_path <- paste0(system.file(package = "immunarch"), "/extdata/io/")
    > immdata <- repLoad(file_path)
    
    == Step 1/3: loading repertoire files... ==
    
    Error in .split_to_batches(.path, "<initial>") :
     Input file or directory not found: D:/temp/RtmpULq4sE/RLIBS_b38460a31c6c/immunarch/extdata/io/
    Calls: repLoad -> .split_to_batches
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64