Last updated on 2023-12-10 03:59:58 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3.10 | 44.38 | 1046.81 | 1091.19 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.3.10 | 50.42 | 681.11 | 731.53 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.3.10 | 1200.88 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.3.10 | 1135.50 | NOTE | |||
| r-devel-windows-x86_64 | 2.3.10 | 55.00 | 577.00 | 632.00 | NOTE | |
| r-patched-linux-x86_64 | 2.3.10 | 55.14 | 859.21 | 914.35 | OK | |
| r-release-linux-x86_64 | 2.3.10 | 43.66 | 855.76 | 899.42 | OK | |
| r-release-macos-arm64 | 2.3.10 | 188.00 | NOTE | |||
| r-release-macos-x86_64 | 2.3.10 | 314.00 | NOTE | |||
| r-release-windows-x86_64 | 2.3.10 | 71.00 | 526.00 | 597.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.3.10 | 164.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.3.10 | 277.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.3.10 | 66.00 | 461.00 | 527.00 | NOTE |
Version: 2.3.10
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in Rd file 'GetCustomKmerCounts.Rd':
‘custom.range’
Documented arguments not in \usage in Rd file 'GetMutationLoadsFromStrelkaIDVCFs.Rd':
‘list.of.vcfs’
Documented arguments not in \usage in Rd file 'GetMutationLoadsFromStrelkaSBSVCFs.Rd':
‘split.vcfs’
Documented arguments not in \usage in Rd file 'PlotPPM.Rd':
‘pwm’
Documented arguments not in \usage in Rd file 'PlotPPMToPdf.Rd':
‘list.of.pwm’
Documented arguments not in \usage in Rd file 'ReadStrelkaSBSVCF.Rd':
‘suppress.discarded.variants.warnings’
Documented arguments not in \usage in Rd file 'ReadVCF.Rd':
‘num.of.cores’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 2.3.10
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.1000genomes.hs37d5',
'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10'
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.3.10
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.1000genomes.hs37d5',
'BSgenome.Mmusculus.UCSC.mm10'
Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64