preseqR: Predicting Species Accumulation Curves

Originally as an R version of Preseq <doi:10.1038/nmeth.2375>, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) <arXiv:1607.02804v3>.

Version: 4.0.0
Imports: polynom, graphics, stats
Published: 2018-06-27
Author: Chao Deng, Timothy Daley and Andrew D. Smith
Maintainer: Chao Deng <chaodeng at usc.edu>
License: GPL-3
NeedsCompilation: no
Citation: preseqR citation info
Materials: README
CRAN checks: preseqR results

Downloads:

Reference manual: preseqR.pdf
Package source: preseqR_4.0.0.tar.gz
Windows binaries: r-devel: preseqR_4.0.0.zip, r-release: preseqR_4.0.0.zip, r-oldrel: preseqR_4.0.0.zip
OS X binaries: r-release: preseqR_4.0.0.tgz, r-oldrel: preseqR_4.0.0.tgz
Old sources: preseqR archive

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