IsoGene: Testing for monotonic relationship between gene expression and doses in a microarray experiment

Several testing procedures including the global likelihood ratio test (Bartholomew, 1961), Williams (1971, 1972), Marcus (1976), M (Hu et al. 2005) and the modified M (Lin et al. 2007) are used to test for the monotonic trend in gene expression with respect to doses. BH (Benjamini and Hochberg 1995) and BY (Benjamini and Yekutieli 2004) FDR controlling procedures are applied to adjust the raw p-values obtained from the permutations.

Version: 1.0-22
Depends: R (≥ 2.10), Iso
Imports: xtable, Biobase, affy, ff (≥ 2.0.0)
Suggests: tcltk
Published: 2013-11-05
Author: Lin et al.
Maintainer: Martin Otava <martin.otava at uhasselt.be>
License: GPL-3
NeedsCompilation: no
Materials: NEWS
CRAN checks: IsoGene results

Downloads:

Reference manual: IsoGene.pdf
Package source: IsoGene_1.0-22.tar.gz
Windows binaries: r-devel: IsoGene_1.0-22.zip, r-release: IsoGene_1.0-22.zip, r-oldrel: IsoGene_1.0-22.zip
OS X Snow Leopard binaries: r-release: not available, r-oldrel: not available
OS X Mavericks binaries: r-release: not available
Old sources: IsoGene archive