IsoGene: Testing for monotonic relationship between gene expression and
doses in a microarray experiment
Several testing procedures including the global likelihood
ratio test (Bartholomew, 1961), Williams (1971, 1972), Marcus
(1976), M (Hu et al. 2005) and the modified M (Lin et al. 2007)
are used to test for the monotonic trend in gene expression
with respect to doses. BH (Benjamini and Hochberg 1995) and BY
(Benjamini and Yekutieli 2004) FDR controlling procedures are
applied to adjust the raw p-values obtained from the
permutations.
| Version: |
1.0-21 |
| Depends: |
R (≥ 2.10), tcltk, xtable, Iso, affy, ff (≥ 2.0.0) |
| Published: |
2013-03-14 |
| Author: |
Lin et al. |
| Maintainer: |
Martin Otava <martin.otava at uhasselt.be> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| CRAN checks: |
IsoGene results |
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