CRAN Package Check Results for Package anoint

Last updated on 2019-03-22 03:48:25 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4 10.25 70.65 80.90 NOTE
r-devel-linux-x86_64-debian-gcc 1.4 8.67 56.39 65.06 NOTE
r-devel-linux-x86_64-fedora-clang 1.4 95.95 NOTE
r-devel-linux-x86_64-fedora-gcc 1.4 90.76 NOTE
r-devel-windows-ix86+x86_64 1.4 24.00 83.00 107.00 NOTE
r-patched-linux-x86_64 1.4 6.82 66.83 73.65 NOTE
r-patched-solaris-x86 1.4 136.80 NOTE
r-release-linux-x86_64 1.4 6.65 66.96 73.61 NOTE
r-release-windows-ix86+x86_64 1.4 16.00 102.00 118.00 NOTE
r-release-osx-x86_64 1.4 NOTE
r-oldrel-windows-ix86+x86_64 1.4 13.00 104.00 117.00 ERROR
r-oldrel-osx-x86_64 1.4 NOTE

Check Details

Version: 1.4
Check: whether the namespace can be loaded with stated dependencies
Result: NOTE
    Warning: no function found corresponding to methods exports from 'anoint' for: 'show'
    
    A namespace must be able to be loaded with just the base namespace
    loaded: otherwise if the namespace gets loaded by a saved object, the
    session will be unable to start.
    
    Probably some imports need to be declared in the NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.4
Check: examples
Result: ERROR
    Running examples in 'anoint-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: anoint
    > ### Title: Create analysis of interactions object
    > ### Aliases: anoint anoint-class
    >
    > ### ** Examples
    >
    >
    > # NO INTERACTION CONDITION, LOGISTIC MODEL
    >
    > null.interaction <- data.anoint(
    + alpha = c(log(.5),log(.5*.75)),
    + beta = log(c(1.5,2)),
    + gamma = rep(1,2),
    + mean = c(0,0),
    + vcov = diag(2),
    + type="survival", n = 500
    + )
    >
    > head(null.interaction)
     V1 V2 y trt event
    1 1.13496509 0.8500435 1.76330070 1 1
    2 1.11193185 -0.9253130 0.03070875 1 1
    3 -0.87077763 0.8935812 7.78405747 1 1
    4 0.21073159 -0.9410097 5.72447773 1 1
    5 0.06939565 0.5389521 0.50413901 1 0
    6 -1.66264885 -0.1819744 2.24119550 1 1
    >
    > object <- anoint(Surv(y, event)~(V1+V2)*trt,data=null.interaction,family="coxph")
    >
    > object
    Surv(y, event) ~ (V1 + V2) * trt
    >
    > summary(object)
    Length Class Mode
     1 anoint S4
    >
    > # NO INTERACTION CONDITION, WITH PROGNOSTIC SELECTION
    >
    > null.interaction <- data.anoint(
    + alpha = c(log(.2/.8),log(.2*.75/(1-.2*.75))),
    + beta = c(1.5,2,0,0),
    + gamma = rep(1,4),
    + mean = rep(0,4),
    + vcov = diag(4),
    + type="binomial", n = 500
    + )
    >
    > head(null.interaction)
     V1 V2 V3 V4 y trt
    1 0.8673091 0.865266146 -0.3077974 -0.79450198 1 1
    2 -0.2844030 -0.043704121 -2.0828215 0.42120698 0 1
    3 2.1044999 -0.005075368 -0.4167177 -0.08699927 1 1
    4 0.1686389 -0.327485200 -1.3194072 -0.23285019 0 1
    5 0.1879914 0.445059391 -0.1500576 1.07101439 0 1
    6 0.7823411 1.598739005 0.2426519 0.59625770 1 1
    >
    > object <- anoint(y~(V1+V2+V3+V4)*trt,data=null.interaction,select="glmnet")
    Performing selection procedure for prognostic model...
    5 x 1 sparse Matrix of class "dgCMatrix"
    Error in isFALSE(suppRows) : could not find function "isFALSE"
    Calls: anoint -> select.glmnet -> print -> print -> .local
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64